PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0081s0148.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 276aa    MW: 30182 Da    PI: 7.6081
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0081s0148.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.2e-15217251133
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                          C nCgt +  Tp++Rrgp+g++tLCnaCGl+++ k
  Kaladp0081s0148.1.p 217 CKNCGTGSkhTPMMRRGPEGPRTLCNACGLKWANK 251
                          ******9999**********************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.05179114IPR010399Tify domain
SMARTSM009791.0E-1179114IPR010399Tify domain
PfamPF062002.6E-1383113IPR010399Tify domain
PfamPF062033.3E-16146188IPR010402CCT domain
PROSITE profilePS5101713.344146188IPR010402CCT domain
SMARTSM004013.6E-9211265IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-10211256No hitNo description
PROSITE profilePS501148.524211246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13215255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.07E-11216260No hitNo description
PfamPF003204.6E-13217251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSDYSNESI NMQTLMDNAD EDAFVDGEEF ADSGVAGQFE HHLVGDDGVR DGAFTDPIDA  60
VHPHRHSMSA PPPGVDFSTA CSPSQLTLSF HGEVYVFDDV SAEKVQAVLL LLGGYEVPGG  120
DHTGLKPQNQ RSAGDVYGRA MTPTLRAAAL RRFREKKKDR CFEKKIRYTV RKEVAHRMKR  180
NKGQFVSSKA SSEDIGSGSS DGNAYPGAVK EEHETSCKNC GTGSKHTPMM RRGPEGPRTL  240
CNACGLKWAN KVRSRRHPLS PTRVLELFLL VMILL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRFREKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270361.11e-78PREDICTED: GATA transcription factor 24
SwissprotQ8GXL72e-58GAT24_ARATH; GATA transcription factor 24
TrEMBLF6I1U01e-78F6I1U0_VITVI; Putative uncharacterized protein
STRINGVIT_03s0038g00480.t014e-78(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-53ZIM-LIKE 2